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Info
titleReference Documentation

HPC2020: How to connect

First of all, letLet's try explore how to connect to the computing services via SSH:ATOS HPCF or ECS.

Table of Contents

Accessing a login node

  1. Access the default login node of the ATOS HPCF or ECS and take note of what node you are in 

    Expand
    titleSolution - HPCF


    No Format
    ssh hpc-login
    hostname



    Expand
    titleSolution - ECS


    No Format
    ssh ecs-login
    hostname



  2. Open a new tab in your terminal and connect again. Did you get the same hostname? Why is that?

    Expand
    titleAnswer

    hpc-login hostname is an alias to a load-balanced service of login nodes. You may land on a different one every time you connect.

    ecs-login is an alias to a specific login node of the ECS virtual cluster. It is not automatically load-balanced, so you will typically land on the same node on consecutive connections.

    Both aliases will always point to a working login node, and the actual node and complex behind it may change depending on the load, system sessions or outages.


  3. Now, from your open SSH session on Atos HPCF or ECS, connect to the main login alias again. Did it ask for a password? Can you set your account up so jumps between hosts are done without a password?

    Expand
    titleAnswer

    Password-less SSH between ECMWF hosts such as Atos HPCF or ECS nodes, or VDI hosts is not set up by default. If you were asked for a password, you can run the following command from your Atos HPCF, ECS or VDI session to set up  key-based authentication:

    No Format
    ssh-key-setup

    After this you should be able to jump between hosts without having to introduce your password.

    Besides being convenient, this setup is also necessary for other tools such as ECACCESS or ecinteractive to work properly.


Interactive session

Info
titleReference documentation

HPC2020: Persistent interactive job with ecinteractive

Standard sessions on login nodes do not guarantee access to dedicated resources such as cpus or memory, and strict limits on those are imposed. For interactive sessions with dedicated resources we will use ecinteractive

It is installed and available on all the Atos HPCF and ECS nodes, as well as the VDI. If you are connecting from your own computer with teleport, you can download it and run it there (only Mac, Linux or Windows WSL are supported).

  1. Can you get a dedicated interactive session with 10 GB of memory and 4 cpus for 8 hours?

    Expand
    titleSolution

    You can use ecinteractive . It is installed and available on all the Atos HPCF and ECS nodes, as well as the VDI, so you can run it from therelike so:

    No Format
    ecinteractive -c 4 -m 10 -t 8:00

    This will create an interactive job with the requested configuration and land you on a shell in a given node.If you are connecting from your own computer via teleport, you can download it and run it there (no Windows native support, only Mac, Linux or WSL supported).

    Note that by default and unless ran directly on ECS, ecinteractive will use HPCF as the backend. If you wish to force the session to be on ECS, you can dopass the extra option -p ecs

    No Format
    ecinteractive -p ecs -c 4 -m 10 -t 8:00



  2. Log out of that interactive session. Can you reattach to it?

    Expand
    titleSolution

    Your job kept running in the background, and there can only be one interactive job per user. You can attach as many concurrent shells to the same interactive session, for example in different terminal tabs, with:

    No Format
    ecinteractive

    If on ECS, you may want need to run:

    No Format
    ecinteractive -p ecs



  3. How can you get information (amount of resources, time left, etc) of your active ecinteractive session?

    Expand
    titleSolution

    At any point, from any session, you can query ecinteractive for any active sessions with:

    No Format
    ecinteractive -q

    If on ECS, you may want need to run:

    No Format
    ecinteractive -p ecs -q



  4. Cancel your interactive session

    Expand
    titleSolution


    No Format
    ecinteractive -k

    If on ECS, you may want need to run:

    No Format
    ecinteractive -p ecs -k



  5. We can also use ecinteractive to open a JupyterLab instance on the Atos HPCF or ECS. Start a JupyterLab session with 4 GB of memory. When you are happy, cancel the ecinteractive job, since only closing the browser tab will not stop the session.

    Tip
    titleWhere to run it

    You must run ecinteractive from either VDI or your own computer. If you run the command on the Atos HPCF or ECS, it will not be able to open any browser window.


    Expand
    titleSolution

    From VDI or your own computer, you can start up jupyter like so

    No Format
    ecinteractive -j -m 4

    If you want to start it on ECS, you will need to do

    No Format
    ecinteractive -j -m 4 -p ecs


    No Format
    ecinteractive -k

    If on ECS, you may want need to run:

    No Format
    ecinteractive -p ecs -lk

    If you still have the JupiterLab tab open in your browser, you will notice it will stop working.