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Comment: warning about potential ecFlow and python incompatibility

ECMWF is updating updated the default versions of its software packages and libraries used on Atos HPCF and ECS as part of the regular update cycle.

Info
titleWhen?

The changes will take took place on on Wednesday 15 May 2024 09:00 UTC

...

ModuleBeforeAfterRelease notes
adios2.9.22.9.2https://adios2.readthedocs.io/en/latest/
aec1.0.6

1.1.2

https://gitlab.dkrz.de/k202009/libaec/-/blob/master/CHANGELOG.md
amd-fftw3.0.14.1https://github.com/amd/amd-fftw/blob/amd-fftw/ChangeLog
ansible7.1.0

9.2.0

https://github.com/ansible-community/ansible-build-data/blob/main/7/CHANGELOG-v7.rst
antlr2.7.72.7.7https://www.antlr2.org/doc/
aocc4.0.04.0.0https://www.amd.com/en/developer/aocc.html
apptainer1.1.81.3.0https://github.com/apptainer/apptainer/blob/main/CHANGELOG.md
bison3.8.23.8.2https://fossies.org/linux/bison/ChangeLog
blis3.13.2https://github.com/amd/blis/blob/master/CHANGELOG
boost1.81.01.84.0https://www.boost.org/users/history/version_1_84_0.html
cdo2.1.12.4.0https://code.mpimet.mpg.de/projects/cdo/news
cgal5.5.25.6https://www.cgal.org/releases.html
cmake3.25.23.28.3https://cmake.org/cmake/help/latest/release/
cmor3.7.13.7.3https://cmor.llnl.gov/news/
coda2.24.12.25.1https://github.com/stcorp/coda/blob/master/CHANGES
conda22.11.1-223.11.0-0https://docs.conda.io/projects/conda/en/latest/release-notes.html
cppcheck2.92.13.0https://github.com/danmar/cppcheck/releases
darshan3.4.23.4.4https://www.mcs.anl.gov/research/projects/darshan/
doxygen1.9.61.10.0https://doxygen.nl/manual/changelog.html
eigen3.4.03.4.0https://eigen.tuxfamily.org/index.php?title=3.4
esmf8.4.08.6.0https://earthsystemmodeling.org/static/releases.html
extrae3.8.04.0.6https://github.com/bsc-performance-tools/extrae/blob/master/ChangeLog
fcm2021.05.02021.05.0https://github.com/metomi/fcm/blob/master/CHANGES.md
fdupes2.2.12.2.1https://github.com/adrianlopezroche/fdupes/releases
ferret7.6.37.6.3https://github.com/NOAA-PMEL/PyFerret/releases
ffmpeg5.16.1.1https://github.com/FFmpeg/FFmpeg/blob/master/Changelog
fftw3.3.103.3.10https://www.fftw.org/release-notes.html
fgsl1.5.01.5.0https://github.com/reinh-bader/fgsl/blob/master/NEWS
flex2.6.42.6.4

https://github.com/westes/flex/releases

gdal3.6.23.8.4https://github.com/OSGeo/gdal/blob/v3.6.2/NEWS.md
gdl1.0.21.0.4https://github.com/gnudatalanguage/gdl/releases
geocat2022.11.02024.01.0https://github.com/NCAR/geocat-comp
geos3.11.1

3.12.1

https://github.com/libgeos/geos/releases
git2.39.12.43.1https://raw.githubusercontent.com/git/git/master/Documentation/RelNotes/2.39.1.txt
gitflow1.12.31.12.3https://github.com/petervanderdoes/gitflow-avh/releases/tag/1.12.3
github-cli2.44.12.44.1https://github.com/cli/cli/releases
gmt6.4.06.50https://docs.generic-mapping-tools.org/dev/changes.html
gnuparallel20230122

20240122

https://www.gnu.org/software/parallel/
go1.19.51.12.7https://go.dev/doc/devel/release
gperf3.13.1

https://github.com/rurban/gperf/blob/master/ChangeLog

grace5.1.255.1.25https://plasma-gate.weizmann.ac.il/Grace/
grads2.1.a2.oga.12.1.a2.oga.1http://opengrads.org
grass8.2.18.3.1https://grass.osgeo.org/news/2023_01_21_grass_gis_8_2_1_released/
gsl2.72.7http://git.savannah.gnu.org/cgit/gsl.git/tree/NEWS
hdf4.2.144.2.14https://www.hdfgroup.org/2018/07/release-of-hdf-4-2-14-newsletter-162/
hdf5-parallel1.12.21.14.3https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2-RELEASE.txt
hdf51.12.21.14.3https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2-RELEASE.txt
hdfeos3.03.0https://wiki.earthdata.nasa.gov/display/DAS/Toolkit+Downloads
hdfview3.1.43.3.1https://www.hdfgroup.org/downloads/hdfview/
hpcx-openmpi2.9.02.9.0https://developer.nvidia.com/networking/hpc-x
iris3.4.03.7.0https://scitools-iris.readthedocs.io/en/v3.4.1/whatsnew/index.html
jasper4.0.04.2.0https://github.com/jasper-software/jasper/releases
java11.0.611.0.6https://www.oracle.com/java/technologies/javase/11all-relnotes.html
julia1.8.51.10.0
lcov1.162.0https://github.com/linux-test-project/lcov/releases
lftp4.9.24.9.2https://lftp.yar.ru/news.html
libflame3.13.1https://github.com/flame/libflame
libspatialindex1.9.31.9.3https://github.com/libspatialindex/libspatialindex/releases
libtensorflow2.7.02.15.0https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md
maven3.8.73.9.6https://maven.apache.org/release-notes-all.html
mongodb5.0.87.0.5https://www.mongodb.com/docs/manual/release-notes/
nccmp1.9.1.01.9.1.0https://gitlab.com/remikz/nccmp
ncl6.6.26.6.2https://github.com/NCAR/ncl
nco4.9.75.1.9https://nco.sourceforge.net/highlights_old.shtml
ncview2.1.72.1.8http://meteora.ucsd.edu/~pierce/ncview_home_page.html
netcdf4-parallel4.9.14.9.2https://docs.unidata.ucar.edu/netcdf-c/current/RELEASE_NOTES.html
netcdf44.9.14.9.2https://docs.unidata.ucar.edu/netcdf-c/current/RELEASE_NOTES.html
ninja1.11.11.11.1https://github.com/ninja-build/ninja/releases
node18.13.020.11.0https://github.com/nodejs/node/blob/main/doc/changelogs/CHANGELOG_V18.md#18.13.0
numdiff5.9.05.9.0https://www.nongnu.org/numdiff/
nvidia22.1124.1https://developer.nvidia.com/hpc-sdk
octave7.3.08.4.0https://octave.org/NEWS-7.html
onnxruntime1.10.01.16.3https://github.com/microsoft/onnxruntime
openblas0.3.210.3.26https://github.com/xianyi/OpenBLAS/releases
openjpeg2.5.02.5.0http://www.openjpeg.org/2022/05/13/OpenJPEG-2.5.0-released
panoply5.2.35.3.2https://www.giss.nasa.gov/tools/panoply/changelog.html
parmetis4.0.34.0.3http://glaros.dtc.umn.edu/gkhome/metis/parmetis/changes
patchelf0.17.20.17.2https://github.com/NixOS/patchelf/releases
pcraster4.4.0-014.4.1-01https://pcraster.geo.uu.nl
petsc3.20.13.20.3https://gitlab.com/petsc/petsc
pnetcdf1.12.31.12.3https://github.com/Parallel-NetCDF/PnetCDF/blob/master/RELEASE_NOTES
postgres14.514.2https://www.postgresql.org
proj9.1.19.3.1https://proj.org/news.html
psutils1.171.17https://github.com/rrthomas/psutils
pycharm2022.3.22023.3.3https://www.jetbrains.com/pycharm/whatsnew/
pypy3.9-v7.3.11-01

3.10-v7.3.15-01

https://doc.pypy.org/en/latest/index-of-release-notes.html
python33.10.10-013.11.8-01https://docs.python.org/3.10/whatsnew/changelog.html
qgis3.28.33.34.3https://www.qgis.org/en/site/forusers/visualchangelogs.html
qhull8.1-alpha18.1-alpha1http://www.qhull.org/news/qhull-news.html
qt5.12.06.6.1https://wiki.qt.io/Main
R4.2.24.3.3https://cran.r-project.org/doc/manuals/r-release/NEWS.html
rclone1.61.11.65.2https://rclone.org/changelog/
rstudio2022.12.0+3532023.12.1+402https://docs.posit.co/ide/news/
s3cmd2.3.02.1.0https://github.com/s3tools/s3cmd/releases
snakemake7.32.38.5.5https://snakemake.readthedocs.io/en/stable/project_info/history.html#changelog
sqlite3.40.13.46.0https://www.sqlite.org/changes.html
sqlitebrowser3.12.23.12.2https://github.com/sqlitebrowser/sqlitebrowser/releases
stat4.2.14.2.1https://github.com/LLNL/STAT
texlive20222023https://www.tug.org/texlive/
udunits2.2.282.2.28https://github.com/Unidata/UDUNITS-2
wgrib1.8.31.8.5https://www.cpc.ncep.noaa.gov/products/wesley/wgrib.html
wgrib23.1.23.1.3https://www.cpc.ncep.noaa.gov/products/wesley/wgrib2/
wxparaver4.9.24.11.3https://github.com/bsc-performance-tools/wxparaver
xconv1.941.94https://ncas-cms.github.io/xconv-doc/html/index.html

Potential issues

ecFlow and python3 incompatibilities

While the ecFlow client and python3 default versions are updated on the HPCF, if you may be running an older version of the ecFlow server. If in your ecFlow tasks you use the ecFlow Python bindings, they may not work with the new default version of Python.

We will update the version of all servers shortly, but in the meantime you may need to either revert to using python3/old in your tasks, or force them to load the new default ecFlow module.