This tutorial demonstrates how to generate a single plume trajectory with FLEXPART and how to visualise the results in various ways.
Please enter folder 'plume_trajectory' to start working.
In this example we will generate a forward trajectory by releasing atmospheric tracers from Newcastle.
The simulation itself is defined by the 'tr_run' FLEXPART Run icon and the 'rel_ncastle' FLEXPART Release icon, respectively. Both these are encompassed in a single macro called 'tr_run.mv'. For simplicity will use this macro to examine the settings in detail.
The macro starts with defining the release like this:
rel_ncastle = flexpart_release( name : "NEWCASTLE", starting_date : 0, starting_time : 15, ending_date : 0, ending_time : 18, level_units : "agl", top_level : 500, bottom_level : 0, particle_count : 10000, masses : 1000, area : [54.96,-1.6,54.96,-1.6] )
This says that the release will happen over a 3 h period in the lower 500 m at Newcastle and we will release 1000 kg of material in total.
Please note that
- the species is not defined here (will be defined in
flexpart_run()
) - we used dates relative to the starting date of the simulation (see also in
flexpart_run()
)
The actual simulation is carried out by calling flexpart_run()
:
#Run flexpart (asynchronous call!) r = flexpart_run( output_path : "result_tr", input_path : "../data", starting_date : 20120517, starting_time : 12, ending_date : 20120519, ending_time : 12, output_field_type : "none", output_trajectory : "on", output_area : [40,-25,66,10], output_grid : [0.25,0.25], output_levels : 500, release_species : 1, releases : rel_ncastle print(r)
Here we defined both the input and output path and specified the simulation period and the output grid as well. We also told FLEXPART to only generate plume trajectories on output.
The actual species that will be released is defined as an integer number (for details about using the species see here). With the default species settings number 1 stands for atmospheric tracer.
If we run this macro (or alternatively right-click execute
the FLEXPART Run icon) the resulting CSV file, 'tr_r001.csv', will be available (after a minute or so) in folder 'result_tr'. For details about the FLEXPART trajectory outputs click here.
Step 1 - Plotting the mean track
First, we read the CSV file using a Table Reader:
#The input file dIn="result_tr" inFile=dIn & "/tr_r001.csv" #Read table (CSV) data tbl=read_table(table_filename: inFile, table_header_row: "2", table_meta_data_rows: "1")
Next, we determine the trajectory (i.e. the release) start date and time from the table header:
#Read runDate from table header runDate=date(metadata_value(tbl,"runDate")) runTime=number(metadata_value(tbl,"runTime")) runDate=runDate + hour(runTime/10000) #Read release start date from table header startSec=number(metadata_value(tbl,"start")) releaseDate=runDate + second(startSec)
Next, we read the coordinates of the mean track and use Input Visualiser and Graph Plotting to plot it:
#Read columns from table mLat=tolist(values(tbl,"meanLat")) mLon=tolist(values(tbl,"meanLon")) #visualiser iv_curve = input_visualiser( input_plot_type : "geo_points", input_longitude_variable : mLon, input_latitude_variable : mLat ) #line attributes graph_curve=mgraph(graph_line_colour: "red", graph_line_thickness: "3", graph_symbol: "on", graph_symbol_marker_index: 15, graph_symbol_height: 0.5, graph_symbol_colour: "white", graph_symbol_outline: "on" )
Then we define the title:
txt="Mean trajectory starting at: " & string(releaseDate,"yyyymmdd") & " " & string(releaseDate,"HH") & " UTC" title=mtext(text_line_1: txt, text_font_size: 0.4)
the mapview:
and finally generate the plot:
plot(view,iv_curve,graph_curve,title)
Having run the macro we will get a plot like this:
Step 2 - Plotting the dates along the mean track
The macro to use is 'plot_tr_step2.mv'. This macro is basically the same as the one in Step 1, but we have to modify and extend it a bit.
The first difference is that we need to determine the middle of the release interval since the trajectory waypoint times are given in seconds elapsed since this date. The release date reading part needs to be modified like this:
#Read release dates from table header startSec=number(metadata_value(tbl,"start")) endSec=number(metadata_value(tbl,"end")) releaseDate=runDate + second(startSec) releaseMidDate=runDate + second((endSec+startSec)/2)
Then we need to add a new plotting layer for the date labels. Using the information above we can build the list of strings we want to show along the track and use the Input Visualiser and Symbol Plotting to define the plot:
#Read waypoint times from table #These are seconds elapsed since the middle of the release interval tt=values(tbl,"time") #Build the list of date strings to be plotted ttLst=nil for i=1 to count(tt) do d=releaseMidDate + second(tt[i]) ttLst = ttLst & [ " " & string(d,"dd") & "/" & string(d,"HH")] end for #visualiser iv_date = input_visualiser( input_plot_type : "geo_points", input_longitude_variable : mLon, input_latitude_variable : mLat ) #line attributes sym_date=msymb(symbol_type: "text", symbol_text_list: ttLst, symbol_text_font_size: 0.3, symbol_text_font_colour: "navy" )
Finally the plot command has to be extended like this:
plot(view,iv_curve,graph_curve,iv_date,sym_date,title)
Having run the macro we will get a plot like this:
Step 3 - Plotting the cluster centres
The macro to use is 'plot_tr_step3.mv'.